CoderData is a cancer benchmark data package developed in Python and R. There are two aspects of this package, the backend build section and the user facing python package. The build section is a github workflow that generates four cancer datasets in a format that is easy for users and algorithms to ingest. The python package allows users to easily download the data, load it into python and reformat it as desired.
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) project is a collaborative network funded by the National Cancer Institute (NCI) focused on improving our understanding of cancer biology through the integration of transcriptomic, proteomic, and genomic data.
| Dataset | Unique_Entrez_IDs | Unique_Sample_IDs |
|---|---|---|
| Transcriptomics | 19354 | 1113 |
| Proteomics | 15015 | 1086 |
| Copy_number | 19359 | 1024 |
| Mutations | 18866 | 833 |
